CLI

Launch The App

cargo run

Open A Project

cargo run -- --project "/path/to/project.json"

Open A Single Dataset

cargo run -- "/path/to/ROI1.ome.zarr"

Open A Mosaic From A Project

cargo run -- --project "/path/to/project.json" --mosaic "TMA1v3,TMA2"

Open A Mosaic From A Samplesheet

cargo run -- --mosaic-samplesheet "/path/to/samplesheet.csv"

Set Mosaic Columns

cargo run -- --project "/path/to/project.json" --mosaic "TMA1v3,TMA2" --mosaic-cols 10

Run A Coarse-Level Sanity Check

cargo run -- --check "/path/to/ROI1.ome.zarr"