Skip to content

Thresholding

odon already includes threshold-oriented workflows aimed at rapid marker review rather than a full analysis suite.

What The Current Workflow Supports

The current implementation is strongest for:

  • loading marker-associated values from object or centroid data
  • reviewing thresholds channel by channel
  • previewing threshold effects in the viewer
  • saving per-ROI or per-marker state in project-driven workflows

Where It Appears In The UI

Depending on the data you have loaded, threshold-related controls appear in the right-side tabs, especially around:

  • Cell Thresholds
  • object analysis or layer-specific properties

Best Use Case

The most natural use case today is a spatial proteomics review loop:

  1. open an image dataset
  2. load an object or centroid-backed data source
  3. move marker by marker
  4. compare image context with the thresholded data view
  5. save or export the resulting threshold state for downstream work

Practical Expectation

This should be treated as lightweight viewer-side threshold authoring. If you need a full phenotype logic engine or heavier statistical analysis, odon is better used upstream of that work rather than as the complete environment for it.